\documentclass{article}
\usepackage[]{standalone}
\usepackage{booktabs}
\usepackage[margin=2cm]{geometry}
\usepackage{tabularx}
\usepackage{array}
\usepackage{multirow}

\title{Check - just all latex output together}
\author{}
\date{}

\begin{document}
\maketitle

Notes:
table's 2  and 3 distribution tests come from mgof, which seems not to listen to setting the seed. 

\input{output/table1.tex}

\input{output/table2.tex}
\input{output/table3.tex}
\input{output/table4.tex}
\input{output/table5.tex}


\input{output/appendixtable1.tex}
\input{output/appendixtable2.tex}
\input{output/appendixtable3.tex}
\input{output/appendixtable4.tex}


\newpage

\includegraphics[height=5.5cm]{output/figure1a.pdf}%
\includegraphics[height=5.5cm]{output/figure1b.pdf}

\newpage

\includegraphics[width=\textwidth]{output/figure2a.pdf}
\includegraphics[width=\textwidth]{output/figure2b.pdf}
\newpage

\includegraphics[width=\textwidth]{output/figure4a.pdf}
\includegraphics[width=\textwidth]{output/figure4b.pdf}

\newpage
\includegraphics[width=\textwidth]{output/figure5.pdf}

\includegraphics[width=\textwidth]{output/figure6.pdf}

\newpage
\includegraphics[width=\textwidth]{output/appendixfigure1.pdf}

\includegraphics[width=\textwidth]{output/appendixfigure3.pdf}

\end{document}